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                                  ---  PhyML 20100914  ---                                             
                            http://www.atgc-montpellier.fr/phyml                                          
                         Copyright CNRS - Universite Montpellier II                                 
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. Sequence filename: 			PF00412.nt.phy
. Data set: 				#1
. Tree topology search : 		SPRs
. Initial tree: 			BioNJ
. Model of nucleotides substitution: 	GTR
. Number of taxa: 			40
. Log-likelihood: 			-7710.13125
. Unconstrained likelihood: 		-934.53822
. Parsimony: 				2396
. Tree size: 				23.69664
. Discrete gamma model: 		Yes
  - Number of categories: 		4
  - Gamma shape parameter: 		3.111
. Proportion of invariant: 		0.060
. Nucleotides frequencies:
  - f(A)= 0.26986
  - f(C)= 0.23625
  - f(G)= 0.21577
  - f(T)= 0.27812
. GTR relative rate parameters : 
  A <-> C    2.63762
  A <-> G    4.20122
  A <-> T    1.50718
  C <-> G    3.94364
  C <-> T    4.81714
  G <-> T    1.00000

. Instantaneous rate matrix : 
  [A---------C---------G---------T------]
  -0.88304   0.28235   0.41075   0.18994  
   0.32253  -1.31517   0.38556   0.60707  
   0.51373   0.42216  -1.06191   0.12602  
   0.18430   0.51567   0.09777  -0.79774  



. Run ID:				none
. Random seed:				0
. Subtree patterns aliasing:		no
. Version:				20100914
. Time used:				0h1m9s (69 seconds)

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 Suggested citation:
 S. Guindon & O. Gascuel
 "A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood"
 Systematic Biology. 2003. 52(5):696-704.
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