2009-11-19  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Do properly quote score value when trying to
	substitute it to add HSP link name. This make numbers in
	scientific notation work as expected.
	* test/links.sh: New file to exercise it.

2009-11-06  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Add back name attribute for HTML map tag.

2009-10-08  Nicolas Joly  <njoly@pasteur.fr>

	* test/html.sh: New file to ensure that generated HTML is valid.

	* html4blast.in, AUTHORS: More email cleanup.

2009-10-06  Nicolas Joly  <njoly@pasteur.fr>

	* README: Removed dead URLs and email address for PaintBlast
	package.

2009-09-25  Nicolas Joly  <njoly@pasteur.fr>

	* Release version 1.7.

2009-09-23  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Do reset HTML image reference between each
	report, to display the expected single image and not all previous.
	* test/multi.txt, test/multi.sh: New files to exercise multiple
	concatenated reports.

2009-09-10  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Add new BLAST+ tool support.

2009-09-09  Nicolas Joly  <njoly@pasteur.fr>

	* html4blastrc: Use SRS at EBI, the Institut Pasteur server has
	been discontinued. And adjust available databanks accordingly.

2009-03-25  Nicolas Joly  <njoly@pasteur.fr>

	* html4blastrc: Allow efetch IMGT links.

2008-06-17  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Do not try to handle anonymous databanks
	sequences, just skip them.
	* test/anon.blast, test/ncbi2.sh: Exercise it.

2008-03-18  Nicolas Joly  <njoly@pasteur.fr>

	* html4blastrc: Update efetch URL, to the new server at the
	Institut Pasteur.

2008-02-21  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.pod: Many small documentation improvements.

2007-09-28  Nicolas Joly  <njoly@pasteur.fr>

	* html4blastrc: Add DDBJ databank URL for external links.
	From Jonas Larsson.

2007-09-27  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Work around a CRLF problem when processing MS-DOS
	generated blast files, under CYGWIN.
	Reported and diagnosed by Jonas Larsson.

2007-09-26  Nicolas Joly  <njoly@pasteur.fr>

	* html4blastrc: Add REFSEQ databank to external links.

2007-04-05  Nicolas Joly  <njoly@pasteur.fr>

	* html4blastrc: Update NCBI links to follow the new Entrez api.
	Reported by John B. Spalding.

2007-02-22  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Fix probability line detection for NCBI blast,
	when score bits use scientific notation display (e.g. 5.168e+04).

2006-11-23  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Add missing checks for errors during file
	processing.

2006-04-21  Nicolas Joly  <njoly@pasteur.fr>

	* html4blastrc: Remove Nrl3d databank links, and PIR url for
	external links forgotten in previous cleanup.

2006-02-07  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Fix WashU probability line detection for recent
	versions.

2005-11-07  Nicolas Joly  <njoly@pasteur.fr>

	* html4blastrc: Remove all PIR databank links, and switch
	SWISSPROT/TREMBL links to new UNIPROTKB databank ones.

2004-10-17  Nicolas Joly  <njoly@pasteur.fr>

	* Makefile.am: Man pages generation update.

2004-10-16  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Splitted probability line detection in 2 distinct
	regular expressions.

2004-10-11  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: NCBI blast 2.2.9 allows floating point values for
	score.

2004-09-09  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Be sure to protect tag values during
	substitutions. Reported by Chris Dwan.

2004-06-18  Nicolas Joly  <njoly@pasteur.fr>

	* m4/acperl.m4: Add missing quotation to perl m4 macros.

	* html4blast.in: Add `binmode()' call for MS-DOS safety, when
	processing binary datas.

2003-08-22  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Draw centered scoring rules numbers.

2003-08-21  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Removed parenthesis in Enzyme pattern detection.
	* test/*.sh: New verbose mode.

2003-04-16  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Use operators `and/or' instead of `&&/||'.

2002-12-27  Nicolas Joly  <njoly@pasteur.fr>

	* html4blastrc: Removed `srs6' reference part from SRS URL.

2002-10-22  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in (db_link): Add version support in accessions
	fields, as it is common today.

	* html4blastrc: New refseq bank for efetch links.

2002-07-15  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Don't show full outfile path in html title, use
	basename instead.

2002-05-30  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Corrected probability line detection.

2001-11-28  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Corrected a bug which prevented image display
	when `-q' flag was set.

2001-07-16  Nicolas Joly  <njoly@pasteur.fr>

	* html4blastrc: Expasy URL updates.

2001-05-29  Nicolas Joly  <njoly@pasteur.fr>

	* configure.in: Bumped version to 1.6a.

2001-05-11  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Corrected flags detection and requirement.

2001-04-05  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Scientific notation score values support.

2001-03-30  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: New flag `-q', image naming is based on query.

2001-03-29  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: New default images naming scheme.

2001-02-06  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in (drawimage): Improve error messages.

2001-01-22  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Better sequence name generator.

2000-12-12  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.pod: POD syntax corrections.

2000-12-11  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Fix WUblast query length detection.

2000-11-28  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Improve probability line detection.

2000-10-18  Nicolas Joly  <njoly@pasteur.fr>

	* README: Remove program version from file.

2000-05-23  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: To avoid image names conflicts, use PID &
	starting time of script, instead of PID.

2000-05-17  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.pod: Document configuration files.

2000-05-16  Nicolas Joly  <njoly@pasteur.fr>

	* html4blastrc: Updated Srs URL.

2000-04-19  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.pod: Updated documentation.
	* html4blast.in: image from PSI-Blast results is now based on
	latest round hits.

2000-04-13  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Added check for `$HOME' environment variable
	existence.

2000-03-22  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.pod: Updated man page.

2000-03-21  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Added links to HSP scores for `-l' flag.

2000-03-03  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Added new flag `-l' to display one HSP per line.

2000-02-24  Nicolas Joly  <njoly@pasteur.fr>

	* html4blastrc: New file for databases configuration, updated
	some URLs.

1999-10-21  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Added support for Trembl (tr) database.

1999-10-19  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Added support for floating score values.

1999-10-14  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Corrected html link motifs detection problems.

1999-10-12  Nicolas Joly  <njoly@pasteur.fr>

	* html4blast.in: Corrected images directory destination to follow
	html output file path.

1999-09-09  Nicolas Joly  <njoly@pasteur.fr>

	* configure.in: Added check for GD.pm v1.20+ perl package, to
	produce PNG images if possible (gif support remains temporary).

1999-08-06  Nicolas Joly  <njoly@pasteur.fr>

	* Added new autoconf macros for perl configuration.

1999-07-25  Nicolas Joly  <njoly@pasteur.fr>

	* Added program name in warning messages.

1999-07-19  Nicolas Joly  <njoly@pasteur.fr>

	* Image sequences number truncated to 600, some viewers do not
	display images with height more than 7900 pixels (netscape, ...),
	Added warning message.

	* Added warning if on-line descriptions and alignments numbers
	are differents, some internal links may fail.

	* Compose image with alignments names, no more with on-line
	descriptions.

1999-07-13  Nicolas Joly  <njoly@pasteur.fr>

	* Corrected sequence detection problem with `-echofilter' flag
	for blast1.

1999-06-04  Nicolas Joly  <njoly@pasteur.fr>

	* Removed efetch CGI from distribution.
	* Added man page.

1999-06-03  Nicolas Joly  <njoly@pasteur.fr>

	* Only aligned sequences are used for graphical alignment summary.
	* Better sequences names checking.

1999-06-01  Nicolas Joly  <njoly@pasteur.fr>

	* New internal document links method, no more redundancy conflict.
	* Full rewrite for less file IO.

1999-05-07  Nicolas Joly  <njoly@pasteur.fr>

	* Allow use of sequence without description and missing space
	separator.
	* Version 1.3a released.

1999-03-15  Nicolas Joly  <njoly@pasteur.fr>

	* Bug correction for query less than 11 residues.

1998-01-04  Nicolas Joly  <njoly@pasteur.fr>

	* Corrected URL for GI links, now use 's' database.
	* Added 'distrib' generation in Makefile.
	* Version 1.3 released.

1998-11-10  Nicolas Joly  <njoly@pasteur.fr>

	* Added support for GI numbers. Thanks to Jacek Nowak for his
	suggestion and feedback.

1998-10-23  Nicolas Joly  <njoly@pasteur.fr>

	* Trembl is now replaced by SpTrembl in Swissprot database SRS
	queries.

1998-10-20  Nicolas Joly  <njoly@pasteur.fr>

	* Version 1.2 released.

1998-10-09  Nicolas Joly  <njoly@pasteur.fr>

	* Corrected a bug in "AREA SHAPE" table print.

1998-09-16  Nicolas Joly  <njoly@pasteur.fr>

	* Added parsing for multiple Blast results in single file.

	* Corrected a bug in making probability links.

	* Integrated a modified version of Alessandro Guffanti "drawimage"
	function (PaintBlast package) to display alignments summary image.

1998-09-08  Nicolas Joly  <njoly@pasteur.fr>

	* Version 1.1 released.

1998-08-24  Nicolas Joly  <njoly@pasteur.fr>

	* Added external sites links support.

1998-08-21  Nicolas Joly  <njoly@pasteur.fr>

	* Version 1.0 released (initial).

